1. RSAT peak-motifs
A workflow combining a series of time- and memory-efficient motif analysis tools to extract motifs from full-size collections of peaks as generated by ChIP-seq, ChIP-chip or other ChIP-X technologies.
标签:ChIP-Seq, Regulatory genomics,Epigenomics
2. GPS
GPS is a high spatial resolution peak detection algorithm for ChIP-Seq data.
标签:Genomics, ChIP-Seq,Transcription Factor Binding Site identification,Regulatory genomics epigenomics
3. Genome Trax
Genome Trax™ enables you to identify human genome variations of functional significance by mapping your NGS data to known elements such as disease mutations and regulatory sites.
标签:Structural variation,Regulatory genomics
4. HINT
HMM-based Identification of TF Footprints
标签:Regulatory genomics,Regulatory genomics epigenomics, Transcription Factor Binding Site identification